The Inca Jungle trek also is available as a 3 day tour. It is ideal if you don’t have a more restricted time scale or budget. However, it does exclude the second day which removes from your schedule the full day high altitude hike. The option unfortunately means you will not pass through the local land touring the coffee and Cacao plantations.
Things still included in your tour:
Hot Springs Machu Picchu
Zip Wire Night in Aguas Calientes
Mountain Biking White Water Rafting (depending on season)